Publications with GenXPro's work -please click titles for more info:

• Rajeev K Varshney, Chi Song , Rachit K Saxena , Sarwar Azam, Sheng Yu, Andrew G Sharpe, Steven Cannon, Jongmin Baek, Benjamin D Rosen, Bunyamin Tar’an, Teresa Millan, Xudong Zhang, Larissa D Ramsay, Aiko Iwata, Ying Wang , William Nelson, Andrew D Farmer, Pooran M Gaur , Carol Soderlund ,R Varma Penmetsa , Chunyan Xu , Arvind K Bharti, Weiming He, Peter Winter et al. Draft genome sequence of chickpea (Cicer arietinum)provides a resource for trait improvement Nature Biotechnology 31, 240–246(2013)doi:10.1038/nbt.2491

• Lenz TL, Eizaguirre C, Rotter B, Kalbe M, Milinski M. Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis.

  Mol Ecol. 2013 Feb;22(3):774-86. doi: 10.1111/j.1365-294X.2012.05756.x. Epub 2012 Sep 13.
  

• Zawada AM, Rogacev KS, Hummel B, Grün OS, Friedrich A, Rotter B, Winter P, Geisel J, Fliser D, Heine GH. SuperTAG Methylation-Specific Digital Karyotyping (SMSDK) Reveals Uremia Induced Epigenetic Dysregulation of Atherosclerosis-Related Genes Circ Cardiovasc Genet. 2012; CIRCGENETICS.112.963207

• Kahl G, Molina C, Rotter B, Jüngling R, Frank A, Krezdorn N, Hoffmeier K, Winter P Reduced representation sequencing of plant stress transcriptomes Journal of Plant Biochemistry and Biotechnology; October 2012, Volume 21, Issue 1 Supplement, pp 119-127

•  Zawada AM, Rogacev KS, Rotter B, Winter P, Marell RR, Fliser D, Heine GH.; SuperSAGE evidence for CD14++CD16+ monocytes as a third monocyte subset. Blood. 2011 Jul 29 

• Yakovlev I, Lee YK, Rotter B, Skrøppa T, Olsen JE, Johnsen Ø, Fossda CG; Molecular dissection of an adaptive epigenetic memory mechanism in norway spruce BMC Proceedings 2011,5 (Suppl 7):O2

• Feldmeyer B, Wheat CW, Krezdorn N, Rotter B, Pfenninger M.;  "Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance." BMC Genomics 2011, 12:317

• Yang ZB, Eticha D, Rotter B, Rao IM, Horst WJ. "Physiological and molecular analysis of polyethylene glycol-induced reduction of aluminium accumulation in the root tips of common bean (Phaseolus vulgaris)".New Phytol. 2011 Jun 13. doi: 10.1111/j.1469-8137.2011.03784.x.

• Molina C. Zaman-Allah M,  Khan F., Fatnassi N,  Horres R, Rotter B. Steinhauer D.  Amenc L, Drevon JJ, Winter P, and  Kahl G "The salt-responsive transcriptome of chickpea roots and nodules via deepSuperSAGE" BMC Plant Biology 2011, 11:31doi:10.1186/1471-2229-11-31

• Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, Albertyn Z, Barrero RA, Krüger DH, Kahl G, Schroth GP, Terauchi R."High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing." PLoS One. 2010 Aug 6;5(8):e12010

• Gilardoni PA, Schuck S, Jüngling R, Rotter B, Baldwin IT, Bonaventure G."SuperSAGE analysis of the Nicotiana attenuata transcriptome after fatty acid-amino acid elicitation (FAC): identification of early mediators of insect responses" BMC Plant Biol. 2010 Apr 14;10:66

• Sharbel TF, Voigt ML, Corral JM, Galla G, Kumlehn J, Klukas C, Schreiber F, Vogel H, Rotter B "Apomictic and sexual ovules of Boechera display heterochronic global gene expression patterns" Plant Cell. 2010 Mar;22(3):655-71. Epub 2010 Mar 19

• M.J. Raftery, E. M. Buchner, H.Matsumura, T.Giese, A. Winkelmann, M. Reuter, R.Terauchi, G.Schönrich and D. H Krüger "Unravelling the interaction of HCMV with dendritic cells using SuperSAGE"J  Gen Virol (2009), DOI 10.1099/vir.0.010538-0

• Molina C. , Rotter B., Horres R., Udupa S.M.,Besser B., Bellarmino L., Baum M., Matsumura H.,Terauchi R., Kahl G., Winter P. "SuperSAGE: the drought stress-responsive transcriptome of chickpea roots" BMC Genomics 2008, 9:553 doi:10.1186/1471-2164-9-553

• Matsumura H., Reuter M., Krüger D.H., Winter P., Kahl G., Terauchi R. SuperSAGE. In: Methods in Molecular Biology Vol. 387:” Serial Analysis of Gene Expression: Digital Gene Expression Profiling”. Ed. K. L. Nielsen, Humana Press Inc., Totowa, NJ, USA (2007)

• Matsumura, H., Nasir, K.H.B., Yoshida K., Ito, A., Kahl, G., Krüger D.H., Terauchi, R. (2006) "SuperSAGE-array: The direct use of 26-base-pair transcript tags in oligonucleotide arrays". Nature Methods 3: 469-474 (2006)

• Matsumura, H., Reich, S., Ito, A., Saitoh, H., Winter, P., Kahl, G., Reuter, M., Krueger D., Terauchi, R. "SuperSAGE: A universal functional genomics tool for eukaryotes". Proc. Natl. Acad. Sci. USA 100: 15718-15723 (2003)

• Matsumura, H., Ito, A., Saitoh, H., Kamoun, S., Winter, P., Kahl, G., Reuter, M., Krüger D., Terauchi, R. "SuperSAGE. Technical advance". Cell. Microbiol. 7: 11-18 (2005)

• Matsumura H, Reich S, Ito A, Saitoh H, Kamoun S, Winter P, Kahl G, Reuter M, Kruger DH, Terauchi R. (2003): "Gene expression analysis of plant host–pathogen interactions by SuperSAGE." PNAS 100:15718–15723. PMID 14676315

• Nasir et al.: "High-throughput in planta expression screening identifies a class II ethylene-responsive element binding factor-like protein that regulates plant cell death and non-host resistance" Plant J. 43:491-505 (2005)

• Rotter B., Kahl G., Horres R., Winter P. "Genexpressionsanalyse mit SuperSAGE und hochparalleler Sequenzierung" LABORWELT 1/2008
   

• Kahl G., Winter P., Matsumura H., Reuter M., Krüger D., Terauchi R. "Molekulares Wechselspiel von Wirt und Pathogen: Simultane, genomweite Transkriptprofilierung zweier Organismen mit SuperSAGE "Biospektrum Spezial, Sonderausgabe, 2006