SuperSAGE, its use for genome-wide expression profiling and high-throughput downstream applications is described in:

• Gilardoni PA, Schuck S, Jüngling R, Rotter B, Baldwin IT, Bonaventure G."SuperSAGE analysis of the Nicotiana attenuata transcriptome after fatty acid-amino acid elicitation (FAC): identification of early mediators of insect responses" BMC Plant Biol. 2010 Apr 14;10:66

• Sharbel TF, Voigt ML, Corral JM, Galla G, Kumlehn J, Klukas C, Schreiber F, Vogel H, Rotter B "Apomictic and sexual ovules of Boechera display heterochronic global gene expression patterns" Plant Cell. 2010 Mar;22(3):655-71. Epub 2010 Mar 19
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• M.J. Raftery, E. M. Buchner, H.Matsumura, T.Giese, A. Winkelmann, M. Reuter, R.Terauchi, G.Schönrich and D. H Krüger "Unravelling the interaction of HCMV with dendritic cells using SuperSAGE"J  Gen Virol (2009),

      DOI 10.1099/vir.0.010538-0

• Molina C. , Rotter B., Horres R., Udupa S.M.,Besser B., Bellarmino L., Baum M., Matsumura H.,Terauchi R., Kahl G., Winter P. "SuperSAGE: the drought stress-responsive transcriptome of chickpea roots" BMC Genomics 2008, 9:553 doi:10.1186/1471-2164-9-553

• Matsumura H., Reuter M., Krüger D.H., Winter P., Kahl G., Terauchi R. SuperSAGE. In: Methods in Molecular Biology Vol. 387:” Serial Analysis of Gene Expression: Digital Gene Expression Profiling”. Ed. K. L. Nielsen, Humana Press Inc., Totowa, NJ, USA (2007)

• Matsumura, H., Nasir, K.H.B., Yoshida K., Ito, A., Kahl, G., Krüger D.H., Terauchi, R. (2006) "SuperSAGE-array: The direct use of 26-base-pair transcript tags in oligonucleotide arrays". Nature Methods 3: 469-474 (2006)

• Matsumura, H., Reich, S., Ito, A., Saitoh, H., Winter, P., Kahl, G., Reuter, M., Krueger D., Terauchi, R. "SuperSAGE: A universal functional genomics tool for eukaryotes". Proc. Natl. Acad. Sci. USA 100: 15718-15723 (2003)

• Matsumura, H., Ito, A., Saitoh, H., Kamoun, S., Winter, P., Kahl, G., Reuter, M., Krüger D., Terauchi, R. "SuperSAGE. Technical advance". Cell. Microbiol. 7: 11-18 (2005)

• Nasir et al.: "High-throughput in planta expression screening identifies a class II ethylene-responsive element binding factor-like protein that regulates plant cell death and non-host resistance" Plant J. 43:491-505 (2005)

• Rotter B., Kahl G., Horres R., Winter P. "Genexpressionsanalyse mit SuperSAGE und hochparalleler Sequenzierung" LABORWELT 1/2008
   

• Kahl G., Winter P., Matsumura H., Reuter M., Krüger D., Terauchi R. "Molekulares Wechselspiel von Wirt und Pathogen: Simultane, genomweite Transkriptprofilierung zweier Organismen mit SuperSAGE "Biospektrum Spezial, Sonderausgabe, 2006